species:   Clros
pid:       PID2251
parent:    cro-mir-46
paralog:   
locus:     CADEHS020000002.2:2828841-2828933
matures:   ['AUUCCCCGUAUCGGAGA', 'AGGCUGGCGAGGCGAAUC']
srr:       ERR5950791
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram CADEHS020000002.2:2828841-2828933

1666 out of bounds
260 alignments
259 proper strand
223 stranded perfect matches

 **************                                                             **************   
AUUCCCCGUAUCGGAGAUUGUGUAUGAAACAUUCUUUUUGGUCACUUUUUGAAGAUGAGCGUGCAUGCAUAAUGAGGCUGGCGAGGCGAAUCC
(((((((((..(((..((((((((((..((.(((.((((.(........).)))).))).)).))))))))))....)))))).)).))))..
AUUCCCCGUAUCGGAGA---------------------------------------------------------------------------- l=17 a=27 c
--------------------------------------------------------------------------AGGCUGGCGAGGCGAAUC- l=18 a=0 c*
---CCCCGUAUCGGA------------------------------------------------------------------------------ l=12 a=66 ma
------------------------------------------------------------------------------UGGCGAGGCGAA--- l=12 a=0 ma*

AUUCCCCGUAUCGGA------------------------------------------------------------------------------ l=15 a=63 
AUUCCCCGUAUCGGg------------------------------------------------------------------------------ l=15 a=1 
AUUCCCCGUAUCGGAG----------------------------------------------------------------------------- l=16 a=10 
AUUCCCCGUgUCGGAG----------------------------------------------------------------------------- l=16 a=1 
AUUCCCCGUAUCGGAGc---------------------------------------------------------------------------- l=17 a=24 
AUUCCCCGUAUCGGAGA---------------------------------------------------------------------------- l=17 a=27 (c)
-UUCCCCGUAUCG-------------------------------------------------------------------------------- l=12 a=1 
-UUCCCCGUAUCGGA------------------------------------------------------------------------------ l=14 a=5 
-UUCCCCGUAUCGGAG----------------------------------------------------------------------------- l=15 a=1 
-UUCCCCGUAUCGGAGA---------------------------------------------------------------------------- l=16 a=2 
-UUCCCCGUAUCGGAGc---------------------------------------------------------------------------- l=16 a=8 
--UCCCCGUAUCGGA------------------------------------------------------------------------------ l=13 a=11 
--UCCCCGUAUCGGAG----------------------------------------------------------------------------- l=14 a=9 
--UCCCCGUAUCGGAGc---------------------------------------------------------------------------- l=15 a=1 
---CCCCGUAUCGG------------------------------------------------------------------------------- l=11 a=1 
---CCCCGUAUCGGA------------------------------------------------------------------------------ l=12 a=66 (ma)
---CCCCGUAUCGGAG----------------------------------------------------------------------------- l=13 a=15 
----CCCGUAUCGGA------------------------------------------------------------------------------ l=11 a=7 
----CCCGUAUCGGAGAUUGUGUAUGAAACAUUCUUU-------------------------------------------------------- l=33 a=1 
-----CCGUAUCGGAG----------------------------------------------------------------------------- l=11 a=2 
------CGUAUCGGAGAUUGUGUAUGAAACAUUCUUU-------------------------------------------------------- l=31 a=1 
----------UCGGAGAUUGUGUAUGAAACAUU------------------------------------------------------------ l=23 a=1 
---------------------------------------------------------AuCGUGCAUGCAUA---------------------- l=14 a=1 

mb-01011
ax-1011001
ku-01
ss-101011111100
fn-111
